My daughter just went through the whole job application process, so I know you MUST have received permission form your references to use them. If all you have is your college profs, then get in touch with them and ask if it is alright. If you don't have anyone local, you don't really have much choice.
If you are asked why you don't have local references, just be low key but honest. Remember that ordinary people have no idea about how culty JWs are , so you woud have to explain that if you no longer believe and have left that religion, that you are shunned. You can't expect understanding from potential employers, if they don't know what is going on. It is also a wonderful, quiet witness AGAINST the Watchtower as ordinary people think shunning is horrible.
To build some local references, consider doing regular volunteer work somewhere, so they get to know you as a nice, honest reliable person.